BLIMP: Software for Best Linear IMPutation

Sample panel and map files

  • A phased genotype data file of a population panel: phased panel data
  • A map file denoting all SNPs in panel file: map_file

  • Note: in case that HapMap population panel data are used, these 2 files can be directly downloaded from HapMap project (.phased.gz and .legend.gz files)

    Sample recombination rate file

  • The required recombination rate files can be obtained by first downloading population recombination files from IMPUTE website then converting to required format using the perl script "make_r.pl" included in the package.



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